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miniseq deep sequencing platform  (Illumina Inc)


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    Illumina Inc miniseq deep sequencing platform
    Miniseq Deep Sequencing Platform, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 98/100, based on 2023 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequencing+platform+pyrosequencing/MiniSeq+System/pmc12390381-68-21-20
    Average 98 stars, based on 2023 article reviews
    miniseq deep sequencing platform - by Bioz Stars, 2026-11
    98/100 stars

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    Related Articles

    other:

    Article Title: Oxidative cleavage of cellulose by fungi in the termite gut.
    Article Snippet: To discover more fungal AA9 LPMOs expressed in the termite gut and to further understand the mechanism of oxidative cleavage of cellulose in the termite gut, we carried out transcriptome analysis using an Illumina high-throughput RNA-sequencing platform.

    Article Title: Ecological complexity of zoonotic malaria in macaque natural hosts
    Article Snippet: Both cox1 and clpc PCR-amplified products were used as templates for amplicon deep sequencing with Illumina HiSeq2500-PE150 platform .

    Article Title: Comparative Assessment of Environmental DNA and Bulk-Sample Metabarcoding in Biosecurity Surveillance for Detecting Biting Midges (Ceratopogonidae)
    Article Snippet: DNA extracted from insect trap samples was run on the Illumina MiSeq high-throughput DNA sequencing platform.

    Article Title: The peculiar characteristics and advancement in diagnostic methodologies of influenza A virus
    Article Snippet: NGS has three types which include Roche 454 GS Junior Titanium (based on pyrosequencing) which was the first platform for NGS, Illumina sequencing (based on reversible chain termination), and Ion Torrent PGM (based on proton detection).

    Virus:

    Article Title: Early vaccine effectiveness estimates against medically attended laboratory-confirmed influenza based on influenza surveillance, Beijing, China, 2024/25 season
    Article Snippet: .. Phylogenetic analysis of the haemagglutinin (HA) gene of the influenza circulating A(H1N1)pdm09 virus strains (n = 38) compared to reference vaccine strains, Beijing, China, week 44 2024−week 2 2025 A/BJXC/SWL1571/2024 A/BJMY/SWL0565/2024 A/Haidian/17044/2024 A/BJDC/SWL12928/2024 A/BJDC/SWL12232/2024 A/BJCY/SWL12077/2024 A/BJFT/SWL1208/2024 A/BJMY/SWL0511/2024 A/BJHD/SWL12585/2024 A/BJCY/SWL1800/2024 A/BJHD/SWL12519/2024 A/BJCY/SWL13086/2024 A/BJCY/SWL1690/2024 A/BJFT/SWL1203/2024 A/BJCY/SWL13089/2024 A/BJCY/SWL13010/2024 A/BJCY/SWL13037/2024 A/BJCY/SWL12849/2024 A/BJCY/SWL11791/2024 A/BJMY/SWL0563/2024 A/BJDC/SWL12937/2024 A/BJCY/SWL12611/2024 A/BJDC/SWL12296/2024 A/BJDC/SWL12186/2024 A/BJCY/SWL13042/2024 A/BJMY/SWL2229/2024 A/BJFT/SWL1228/2024 A/BJFT/SWL880/2024 A/BJCY/SWL1859/2024 A/BJFT/SWL1239/2024 A/BJFT/SWL1219/2024 A/BJDC/SWL12256/2024 A/BJDC/SWL12254/2024 A/BJMY/SWL0560/2024 A/BJMY/SWL0546/2024 A/BJCY/SWL11920/2024 A/HaidianCDC/12859/2023 A/BJMY/SWL2167/2024 A/BJMY/SWL0549/2024 A/BJMY/SWL0495/2024 A/Victoria/4897/2022 A/Wisconsin/67/2022 6B.1A.5a.2a.1 6B.1A.5a.2a A/Yunnan/Wuhua/SWL1938/2016 A/Beijing-Xicheng/SWL1665/2017 A/Henan-Luolong/SWL1268/2017 A/Heilongjiang-Jianhua/SWL1249/2017 A/Sichuan/Anyue/SWL1215/2017 A/Hubei/Xiangcheng/SWL1326/2017 6B.1 A/Jilin/Ningjiang/SWL1297/2017 A/Iowa/53/2015 A/Minnesota/32/2015 A/California/07/2009 6B.2 Test viruses Tree scale: 0.005 Vaccine viruses The PCR products were sequenced using the Illumina MiniSeq deep sequencing platform, and additional HA sequences (n = 14) were obtained from the Global Initiative for Sharing All Influenza Data (GISAID) [21]. ..

    Polymerase Chain Reaction:

    Article Title: Early vaccine effectiveness estimates against medically attended laboratory-confirmed influenza based on influenza surveillance, Beijing, China, 2024/25 season
    Article Snippet: .. Phylogenetic analysis of the haemagglutinin (HA) gene of the influenza circulating A(H1N1)pdm09 virus strains (n = 38) compared to reference vaccine strains, Beijing, China, week 44 2024−week 2 2025 A/BJXC/SWL1571/2024 A/BJMY/SWL0565/2024 A/Haidian/17044/2024 A/BJDC/SWL12928/2024 A/BJDC/SWL12232/2024 A/BJCY/SWL12077/2024 A/BJFT/SWL1208/2024 A/BJMY/SWL0511/2024 A/BJHD/SWL12585/2024 A/BJCY/SWL1800/2024 A/BJHD/SWL12519/2024 A/BJCY/SWL13086/2024 A/BJCY/SWL1690/2024 A/BJFT/SWL1203/2024 A/BJCY/SWL13089/2024 A/BJCY/SWL13010/2024 A/BJCY/SWL13037/2024 A/BJCY/SWL12849/2024 A/BJCY/SWL11791/2024 A/BJMY/SWL0563/2024 A/BJDC/SWL12937/2024 A/BJCY/SWL12611/2024 A/BJDC/SWL12296/2024 A/BJDC/SWL12186/2024 A/BJCY/SWL13042/2024 A/BJMY/SWL2229/2024 A/BJFT/SWL1228/2024 A/BJFT/SWL880/2024 A/BJCY/SWL1859/2024 A/BJFT/SWL1239/2024 A/BJFT/SWL1219/2024 A/BJDC/SWL12256/2024 A/BJDC/SWL12254/2024 A/BJMY/SWL0560/2024 A/BJMY/SWL0546/2024 A/BJCY/SWL11920/2024 A/HaidianCDC/12859/2023 A/BJMY/SWL2167/2024 A/BJMY/SWL0549/2024 A/BJMY/SWL0495/2024 A/Victoria/4897/2022 A/Wisconsin/67/2022 6B.1A.5a.2a.1 6B.1A.5a.2a A/Yunnan/Wuhua/SWL1938/2016 A/Beijing-Xicheng/SWL1665/2017 A/Henan-Luolong/SWL1268/2017 A/Heilongjiang-Jianhua/SWL1249/2017 A/Sichuan/Anyue/SWL1215/2017 A/Hubei/Xiangcheng/SWL1326/2017 6B.1 A/Jilin/Ningjiang/SWL1297/2017 A/Iowa/53/2015 A/Minnesota/32/2015 A/California/07/2009 6B.2 Test viruses Tree scale: 0.005 Vaccine viruses The PCR products were sequenced using the Illumina MiniSeq deep sequencing platform, and additional HA sequences (n = 14) were obtained from the Global Initiative for Sharing All Influenza Data (GISAID) [21]. ..

    Article Title: End-of-Season Influenza Vaccine Effectiveness Against Laboratory-Confirmed Influenza in Outpatient Settings, Beijing, China: A Test-Negative Design
    Article Snippet: .. Sequencing by synthesis of the viral hemagglutinin (HA) gene was undertaken on the PCR products of original specimens using the Illumina MiniSeq deep sequencing platform. ..

    Sequencing:

    Article Title: Early vaccine effectiveness estimates against medically attended laboratory-confirmed influenza based on influenza surveillance, Beijing, China, 2024/25 season
    Article Snippet: .. Phylogenetic analysis of the haemagglutinin (HA) gene of the influenza circulating A(H1N1)pdm09 virus strains (n = 38) compared to reference vaccine strains, Beijing, China, week 44 2024−week 2 2025 A/BJXC/SWL1571/2024 A/BJMY/SWL0565/2024 A/Haidian/17044/2024 A/BJDC/SWL12928/2024 A/BJDC/SWL12232/2024 A/BJCY/SWL12077/2024 A/BJFT/SWL1208/2024 A/BJMY/SWL0511/2024 A/BJHD/SWL12585/2024 A/BJCY/SWL1800/2024 A/BJHD/SWL12519/2024 A/BJCY/SWL13086/2024 A/BJCY/SWL1690/2024 A/BJFT/SWL1203/2024 A/BJCY/SWL13089/2024 A/BJCY/SWL13010/2024 A/BJCY/SWL13037/2024 A/BJCY/SWL12849/2024 A/BJCY/SWL11791/2024 A/BJMY/SWL0563/2024 A/BJDC/SWL12937/2024 A/BJCY/SWL12611/2024 A/BJDC/SWL12296/2024 A/BJDC/SWL12186/2024 A/BJCY/SWL13042/2024 A/BJMY/SWL2229/2024 A/BJFT/SWL1228/2024 A/BJFT/SWL880/2024 A/BJCY/SWL1859/2024 A/BJFT/SWL1239/2024 A/BJFT/SWL1219/2024 A/BJDC/SWL12256/2024 A/BJDC/SWL12254/2024 A/BJMY/SWL0560/2024 A/BJMY/SWL0546/2024 A/BJCY/SWL11920/2024 A/HaidianCDC/12859/2023 A/BJMY/SWL2167/2024 A/BJMY/SWL0549/2024 A/BJMY/SWL0495/2024 A/Victoria/4897/2022 A/Wisconsin/67/2022 6B.1A.5a.2a.1 6B.1A.5a.2a A/Yunnan/Wuhua/SWL1938/2016 A/Beijing-Xicheng/SWL1665/2017 A/Henan-Luolong/SWL1268/2017 A/Heilongjiang-Jianhua/SWL1249/2017 A/Sichuan/Anyue/SWL1215/2017 A/Hubei/Xiangcheng/SWL1326/2017 6B.1 A/Jilin/Ningjiang/SWL1297/2017 A/Iowa/53/2015 A/Minnesota/32/2015 A/California/07/2009 6B.2 Test viruses Tree scale: 0.005 Vaccine viruses The PCR products were sequenced using the Illumina MiniSeq deep sequencing platform, and additional HA sequences (n = 14) were obtained from the Global Initiative for Sharing All Influenza Data (GISAID) [21]. ..

    Article Title: Exploratory Immunosequencing of an Intracapillary Monoclonal Deposits Disease in a Patient With Subacute Neuro-Renal Syndrome
    Article Snippet: .. The resulting libraries were sequenced with an Illumina deep sequencing platform. ..

    Article Title: Transcriptome Analysis Between Parents and Offspring Revealed the Early Salt Tolerance Mechanism of Rice NGY1.
    Article Snippet: .. These libraries were sequenced using the Illumina deep sequencing platform. ..

    Article Title: End-of-Season Influenza Vaccine Effectiveness Against Laboratory-Confirmed Influenza in Outpatient Settings, Beijing, China: A Test-Negative Design
    Article Snippet: .. Sequencing by synthesis of the viral hemagglutinin (HA) gene was undertaken on the PCR products of original specimens using the Illumina MiniSeq deep sequencing platform. ..



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    Mapping of the search strategy, methodology, and results. To assess the role of the CVM in HPV‐associated cervical carcinogenesis, 2223 records were identified in Embase, Medline and Web of Science, of which 951 duplicates were excluded. 1272 articles were screened by title and abstract for relevance and the full texts of 276 articles were assessed for eligibility. Two additional articles were identified in PubMed following the systematic search. A total of 21 observational studies, 4 systematic reviews, and 3 meta‐analyses were included. To assess the diagnostic performance of the CVM in HPV‐associated cervical carcinogenesis, 7 relevant articles were identified in PubMed, of which 3 were excluded. Of the 4 full texts assessed for eligibility, one was excluded as it only assessed the diagnostic performance of bacterial genes (not taxa). The corresponding search strategies for the aforementioned searches are detailed in Table . To identify common metagenomic techniques in microbial research, 11 resources were identified through a focused search of Google and Google Scholar to identify webpages and scholarly articles, respectively. Abbreviations: CVM, cervicovaginal microbiome; HPV, human papillomavirus; ROC, receiver operating characteristic; WMS, whole metagenome <t>sequencing;</t> 16S rRNA, 16S ribosomal RNA.
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    Image Search Results


    Mapping of the search strategy, methodology, and results. To assess the role of the CVM in HPV‐associated cervical carcinogenesis, 2223 records were identified in Embase, Medline and Web of Science, of which 951 duplicates were excluded. 1272 articles were screened by title and abstract for relevance and the full texts of 276 articles were assessed for eligibility. Two additional articles were identified in PubMed following the systematic search. A total of 21 observational studies, 4 systematic reviews, and 3 meta‐analyses were included. To assess the diagnostic performance of the CVM in HPV‐associated cervical carcinogenesis, 7 relevant articles were identified in PubMed, of which 3 were excluded. Of the 4 full texts assessed for eligibility, one was excluded as it only assessed the diagnostic performance of bacterial genes (not taxa). The corresponding search strategies for the aforementioned searches are detailed in Table . To identify common metagenomic techniques in microbial research, 11 resources were identified through a focused search of Google and Google Scholar to identify webpages and scholarly articles, respectively. Abbreviations: CVM, cervicovaginal microbiome; HPV, human papillomavirus; ROC, receiver operating characteristic; WMS, whole metagenome sequencing; 16S rRNA, 16S ribosomal RNA.

    Journal: Journal of Medical Virology

    Article Title: A Narrative Review of the Putative Etiologic Role and Diagnostic Utility of the Cervicovaginal Microbiome in Human Papillomavirus‐Associated Cervical Carcinogenesis

    doi: 10.1002/jmv.70027

    Figure Lengend Snippet: Mapping of the search strategy, methodology, and results. To assess the role of the CVM in HPV‐associated cervical carcinogenesis, 2223 records were identified in Embase, Medline and Web of Science, of which 951 duplicates were excluded. 1272 articles were screened by title and abstract for relevance and the full texts of 276 articles were assessed for eligibility. Two additional articles were identified in PubMed following the systematic search. A total of 21 observational studies, 4 systematic reviews, and 3 meta‐analyses were included. To assess the diagnostic performance of the CVM in HPV‐associated cervical carcinogenesis, 7 relevant articles were identified in PubMed, of which 3 were excluded. Of the 4 full texts assessed for eligibility, one was excluded as it only assessed the diagnostic performance of bacterial genes (not taxa). The corresponding search strategies for the aforementioned searches are detailed in Table . To identify common metagenomic techniques in microbial research, 11 resources were identified through a focused search of Google and Google Scholar to identify webpages and scholarly articles, respectively. Abbreviations: CVM, cervicovaginal microbiome; HPV, human papillomavirus; ROC, receiver operating characteristic; WMS, whole metagenome sequencing; 16S rRNA, 16S ribosomal RNA.

    Article Snippet: , Amplicon sequencing using a sequencing platform (i.e., Pyrosequencing, Illumina MiSeq, Illumina nextSeq, PacBlo Seqel II/IIe, Nanopore) , Sequencing all genomic DNA using a sequencing platform (i.e., Illumina novaSeq, HiSeq ).

    Techniques: Diagnostic Assay, Sequencing

    16S rRNA gene sequencing and WMS for CVM characterization.

    Journal: Journal of Medical Virology

    Article Title: A Narrative Review of the Putative Etiologic Role and Diagnostic Utility of the Cervicovaginal Microbiome in Human Papillomavirus‐Associated Cervical Carcinogenesis

    doi: 10.1002/jmv.70027

    Figure Lengend Snippet: 16S rRNA gene sequencing and WMS for CVM characterization.

    Article Snippet: , Amplicon sequencing using a sequencing platform (i.e., Pyrosequencing, Illumina MiSeq, Illumina nextSeq, PacBlo Seqel II/IIe, Nanopore) , Sequencing all genomic DNA using a sequencing platform (i.e., Illumina novaSeq, HiSeq ).

    Techniques: Sequencing, Extraction, Amplification, Nanopore Sequencing, Marker, Bacteria